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Experimental Factor Ontology

It is an application focused on the ontology modeling ot the experimental factors in ArrayExpress.The application is used also in the constructing of mappings to multiple existing domain specific ontologies, such as Disease Ontology. ...
Perl
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AndroMDA

... constraints that protect you against the most common modeling mistakes - add your own project-specific constraints, too. - Model-to-model transformations help to raise abstraction level. Write your own transformations, currently in Java, or in any transformation language, e.g. the QVT-like Atlas Transformation Language (ATL), in the next major AndroMDA ...
Java
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SharpConstruct

SharpConstruct is a 3D modeling program that paint depths on to polygon models in real-time. Unlike traditional modeling programs, SharpConstruct makes it easy to model organic ... simple and organic; you won't need years of modeling experience to create detailed models in SharpConstruct.   ...
C/C++
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Violet UML Editor

Violet is a UML editor with these benefits: - Very easy to learn and use. - Draws nice-looking diagrams. - Completely free. - Cross-platform. Violet is intended for developers, students, teachers, and authors who need to produce simple UML diagrams quickly.It draws nice-looking - use case ...
Java
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BRL CAD package

... is a powerful Constructive Solid Geometry (CSG) solid modeling system with over 20 years development and production ... has become a powerful constructive solid geometry (CSG) modeling package that has been licensed at over 2,000 sites throughout the world. It contains a large collection of tools, utilities, and libraries including an ...
C/C++
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Ncvtk

... supports codes that are part of the Flexible Modeling System infrastructure provided the data lie on a longitude/latitude, structured grid. Ncvtk contains a number of built-in VTK visualization pipelines (color plots, contours, vector arrows, slices, etc.). New pipelines can be added on demand. An intuitive graphical user interface will get ...
Python
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Gaphor

Gaphor is an easy to use modeling environment. This means that you are able to ... data model. This guarantees future compatibility with other modeling tools. - The data model is developed in Gaphor itself! - The following diagram types are supported: - Class diagrams - Use ...
Python
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Open Babel

... search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.That means that Open Babel has two main pieces: - Ready-to-use programs for interconverting, searching, modifying, and analyzing chemical files - A complete programmer's toolkit to allow easy chemistry software development ...
C/C++
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The Python Macromolecular Library

... implement high-level application programs for macromolecular crystallography, NMR, modeling, and visualization. This includes specialized classes for proteins, DNA, amino acids, and nucleic acids. Also included is a extensive monomer library, element library, and specialized classes for performing unit cell calculations combined with a full space group library. ...
Python
The Python Macromolecular Library downloadDownload

athenaCL

... includes integrated instrument libraries, post-tonal and microtonal pitch modeling tools, multiple-format graphical outputs, and musical output in Csound, MIDI, audio file, XML, and text formats.Musical parts are deployed as Textures, layered surface-defining objects containing numerous independent ParameterObjects to control pitch, tempo, rhythm, amplitude, panning, and instrument (Csound) parameters.The system includes ...
Python
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