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Scientific Graphics scripts

Wolfram style cellular automata

This is a little script that uses Python to generate the cellular automata that Wolfram discusses in his book "A New Kind of Scilfram disquot;.The script uses the Python Imaging Library to render the output, but you could replace this with text or any other method of visualization. ...
Python

Sparse

'sparse' is a matrix class based on a dictionary to store data using 2-element tuples (i,j) as keys (i is the row and j the column index). The common matrix operations such as 'dot' for the inner product, multiplication/division by a scalar, indexing/slicing, etc. are overloaded for convenience.When used in conjunction ...
Python

Fractal tree

... node coordinates as complex numbers and Tkinter for graphics. It is a good example of how Python's powerful data structures, combined with a vast body of modules can be used to write concise and user friendly code. The code was tested with Python 2.3 and 2.4. ...
Python

Access Cairo surface from numpy and pygame

This script aliases the memory from a cairo surface so that you can manipulate the bits as a numpy array, or display/manipulate the image in pygame. ...
Python

NumPy

The fundamental package needed for scientific computing with Python is called NumPy.  This package ... tools for integrating Fortran code. Besides it's obvious scientific uses, NumPy can also be used as an efficient multi-dimensional container of generic data. Arbitrary data-types can be defined. This allows NumPy to seamlessly and speedily integrate ...
Python

Modular toolkit for data processing

Modular toolkit for Data Processing (MDP) is a Python data processing framework. Implemented algorithms include: Principal Component Analysis (PCA), Independent Component Analysis (ICA), Slow Feature Analysis (SFA), Growing Neural Gas (GNG), Factor Analysis, Fisher Discriminant Analysis (FDA), and Gaussian Classifiers. From the user's perspective, MDP consists of a collection of trainable ...
Python

Natural Language Toolkit

NLTK, the Natural Language Toolkit, is a suite of program modules, data sets and tutorials supporting research and teaching in computational linguistics and natural language processing. NLTK is ideally suited to students who are learning NLP (natural language processing) or conducting research in NLP or closely related areas, including empirical linguistics, ...
Python

Charlemagne

Charlemagne is a genetic programming application which aims to be highly configurable and applicable to a broad range of problems.It is written in Python and Lisp and to some degree is extensible in both languages. It features built-in input-output mapping support, but also provides the ability to define complex fitness calculators ...
Python

Temperature class

This script allows you to assign temperature values in one scale and you have it available in others as respective attributes. Kelvin, Celsius, Fahrenheit, and Rankine are supported (k, c, f, r attributes). ...
Python

GENtle

GENtle is a software for DNA and amino acid editing, database management, plasmid maps, restriction and ligation, alignments, sequencer data import, calculators, gel image display, PCR, and much more. ...

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