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The Python Macromolecular Library

... of atomic elements and monomers, an object-oriented data structure describing biological macromolecules, and an OpenGL molecular viewer. The mmLib data model is designed to provide easy access to the various levels of detail needed to implement high-level application programs for macromolecular crystallography, NMR, modeling, and visualization. This includes specialized classes ...
Python
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GTS Library

... computational surface meshes. Main features: - Simple object-oriented structure giving easy access to topological properties. - 2D dynamic Delaunay and constrained Delaunay triangulations. - Robust geometric predicates (orientation, in circle) using fast adaptive floating point arithmetic - Robust set operations on surfaces (union, intersection, difference). - ...
C/C++
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Readable switch construction

... aims to duplicate C's original 'switch' functionality and structure with reasonable accuracy. ...
Python
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Sparse

... (i is the row and j the column index). The common matrix operations such as 'dot' for the inner product, multiplication/division by a scalar, indexing/slicing, etc. are overloaded for convenience.When used in conjunction with the 'vector' class, 'dot' products also apply between matrics and vectors. Two methods, 'CGsolve' and ...
Python
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Modular toolkit for data processing

... or executing all nodes in the flow. This structure allows to specify complex algorithms as a sequence of simpler data processing steps in a natural way. Training can be performed using small chunks of input data, so that the use of very large data sets becomes possible while reducing the ...
Python
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Quick and easy FIFO queue class

... First-In-First-Out queue class based on Python's List data structure. ...
Python
Quick and easy FIFO queue class downloadDownload

Binary search in one line

... and a list 'L', the function returns the index of the number on the list, or -1. ...
Python
Binary search in one line downloadDownload

Rating class with mapping interface

... by value and accessed by key or rating index. ...
Python
Rating class with mapping interface downloadDownload

Implementation of sets using sorted lists

... operations using sorted lists as the underlying data structure. Advantages: - Space savings -- lists are much more compact than a dictionary based implementation. - Flexibility -- elements do not need to be hashable, only __cmp__ is required. - Fast operations depending on the underlying data patterns. ...
Python
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Two pass Pairing Heap with Auxiliary List

... sort. Because of the list of lists data structure, it always takes more memory than either heapq or the builtin sort. ...
Python
Two pass Pairing Heap with Auxiliary List downloadDownload

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