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Gene Parser scripts

Perl Entrez Gene Parser

This program is a parser that abstract a data structure from a given Entrez Gene record, and users of the parser can decide what to do/extract from the data structure. Perl Entrez Gene Parser project provides Perl parsers for NCBI's Entrez Gene based on regular expression, Parse::RecDescent, Parse::Yapp and Perl-byacc. ... provided. For this purpose, we consider several automatic parser generators as well as the venerable Perl5 regular ...
Perl
Perl Entrez Gene Parser downloadDownload

LOVD

This script provides you a freely available tool for Gene-centered collection and display of DNA variations with minimal phenotype and patient data. ...
PHP
LOVD downloadDownload

HTML Parser for PHP

This is an open source HTML parser written in PHP. This parser also comes with a tool that converts HTML to text, as an example. This parser is designed for speed and flexibility. It does ... is not based on callbacks (like a SAX parser) but instead you ask for the next element ...
PHP
HTML Parser for PHP downloadDownload

PHP HTML parser

PHP HTML parser allows you to to parse HTML from php scripts. ...
PHP
PHP HTML parser downloadDownload

Generic command line option parser

... one of the standard Python library command argument parser modules optparse or getopt. The class first tries to use optparse. It it is not there (< Python 2.3), it invokes getopt. However, this is transparent to the application which uses the class. ...
Python
Generic command line option parser downloadDownload

GSA Simple XML Parser

GSA Simple XML Parser is a XML DOM style parser class written in PHP. This class can inport XML data using expat or regex. ...
PHP
GSA Simple XML Parser downloadDownload

pkgconfig parser

This script creates a class to allow access to variables stored in pkg-config files ( or '.pc' files ). This is usefull in conjunction with distutils to get correct information for compiling external C/C modules. Variable substitution is performed with string.Template. ...
Python
pkgconfig parser downloadDownload

xml parser and generator

... a quick and dirty solution for parsing and generating xml. This script uses only the python parser itself for the parsing of xml. xml code ... to valid python code and then evaluated. The generated objects can then be manipluated within python itself ...
Python
xml parser and generator downloadDownload

Record Jar Parser

This script presents you a method to parse a file like object containing data in the record jar format. ...
Python
Record Jar Parser downloadDownload

XML Lexing

... you have slightly incorrect XML that a traditional parser will choke on. In that case you want an XML lexer or "shallow parser". This script is a Python implementation. ...
Python
XML Lexing downloadDownload

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