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Open Babel

... designed to speak the many languages of chemical data. It's an open, collaborative project allowing anyone to search, convert, analyze, or store data from molecular modeling, chemistry, solid-state materials, biochemistry, or related areas.That means that Open Babel has two main pieces: - Ready-to-use programs for interconverting, ...
C/C++
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Fityk

... nonlinear fitting of analytical functions (especially peak-shaped) to data (usually experimental data). There are also people using it to remove the baseline from data, or to display data only. It is reportedly used in crystallography, chromatography, ... points (eg. zero-shift of instrument), handling series of datasets, automation of common tasks with scripts, and more. ...
C/C++
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The Python Macromolecular Library

... library of atomic elements and monomers, an object-oriented data structure describing biological macromolecules, and an OpenGL molecular viewer. The mmLib data model is designed to provide easy access to the various levels of detail needed to implement high-level application programs for macromolecular crystallography, NMR, modeling, ...
Python
The Python Macromolecular Library downloadDownload

Python Laboratory Operations Toolkit

... driver, to allow the very nice, inexpensive LabPro data acquisition unit to be controlled from Python (and others) along with some useful numerical and analytical extensions (splining, nonlinear least squares, etc.), in a somewhat different shape that these are found in, for example, NumPy and SciPy. ...
Python
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FreeMat

... environment for rapid engineering and scientific prototyping and data processing. It is similar to commercial systems such as MATLAB from Mathworks, and IDL from Research Systems, but is Open Source.You can perform powerful Perl-style regular expression manipulations  using the regexp command, and its variants. Plotting functions uses an explicit double-buffering technique ...
C/C++
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MayaVi

MayaVi is a free, easy to use scientific data visualizer. It is written in Python and uses ... grids. - Visualize scalar, vector and tensor data. - Quite a few data filters are also provided. - Supports volume visualization of data via texture and ray cast mappers. - ...
Python
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Maxima

... floating point numbers. Maxima can plot functions and data in two and three dimensions. The Maxima source code can be compiled on many systems, including Windows, Linux, and MacOS X. The source code for all systems and precompiled binaries for Windows and Linux are available at the SourceForge file manager. ...
C/C++
Maxima downloadDownload

Load data in browser without using temp files

This script displays the html files in the default web browser without creating a temp file. It instantiates a trivial http server and calls webbrowser.open with a URL to retrieve html from that server. ...
Python
Load data in browser without using temp files downloadDownload

Simpler item retrieval using tupled subscripting

... cases becomes much simpler. This script is suitable for large data sets where you need alot of very specific items, but it becomes very annoying to type each subscript seperatly and add the lists up. It is also much clearer this way. It also supports writing elements 'in bulk'. ...
Python
Simpler item retrieval using tupled subscripting downloadDownload

Merge sorted sequences

... will run a C speed merge on the data. So, all that is involved is concatenating the sequences and running a sort. ...
Python
Merge sorted sequences downloadDownload

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